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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10091 and 10092 are separated by 619 nucleotides
10092 and 10093 are separated by 1908 nucleotides
10093 and 10094 are separated by 509 nucleotides
10094 and 10095 are separated by 1133 nucleotides
mRNA_1723: 10091 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 38,655 to 42,471
10091
mRNA_1724: 10092 - K08827 PRPF4B serine/threonine-protein kinase PRP4, at 43,091 to 44,788
10092
mRNA_1725: 10093 - KOG2343 Glucose-repressible protein and related proteins, at 46,697 to 49,542
10093
mRNA_1726: 10094 - BLAST Protein priA [Grifola frondosa], at 50,052 to 51,969
10094
mRNA_1727: 10095 - K03843 ALG2 alpha-1,3/alpha-1,6-mannosyltransferase, at 53,103 to 55,256
10095
Group
Condition
mRNA
_1723
mRNA
_1724
mRNA
_1725
mRNA
_1726
mRNA
_1727
10091
10092
10093
10094
10095
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.4
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.1
-0.8
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.5
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
+0.2
-0.8
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
-0.0
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.0
-0.3
N.D.
growth on ypd
YPD
-0.1
N.D.
+0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.3
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.4
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
+0.3
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose
+0.1
N.D.
+0.4
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
N.D.
-0.0
+0.5
N.D.
auxotrophy
Dropout Complete
-0.0
N.D.
+0.3
+0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.2
+0.6
N.D.
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.4
+0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
+0.7
+0.9
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+1.1
+0.9
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
+1.3
+1.4
N.D.
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