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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10093 and 10094 are separated by 509 nucleotides
10094 and 10095 are separated by 1133 nucleotides
10095 and 10096 are separated by 439 nucleotides
10096 and 10097 are separated by 472 nucleotides
mRNA_1725: 10093 - KOG2343 Glucose-repressible protein and related proteins, at 46,697 to 49,542
10093
mRNA_1726: 10094 - BLAST Protein priA [Grifola frondosa], at 50,052 to 51,969
10094
mRNA_1727: 10095 - K03843 ALG2 alpha-1,3/alpha-1,6-mannosyltransferase, at 53,103 to 55,256
10095
mRNA_1728: 10096 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 55,696 to 58,007
10096
mRNA_1729: 10097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 58,480 to 59,986
10097
Group
Condition
mRNA
_1725
mRNA
_1726
mRNA
_1727
mRNA
_1728
mRNA
_1729
10093
10094
10095
10096
10097
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.5
N.D.
-0.0
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.8
N.D.
-0.3
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.8
N.D.
-0.5
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
N.D.
-0.2
+0.0
growth on ypd
YPD
+0.2
+0.0
N.D.
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
N.D.
-0.5
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.4
N.D.
+0.0
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.2
N.D.
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.0
N.D.
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.5
N.D.
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.1
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
+0.4
+0.1
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.2
N.D.
+0.1
-0.2
auxotrophy
Dropout Complete
+0.3
+0.5
N.D.
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.6
N.D.
-0.2
-0.3
growth on oleic acid
YNB Glucose
+0.4
+0.6
N.D.
-0.3
-0.4
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
N.D.
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
N.D.
+0.5
+0.3
growth on oleic acid
YNB Oleic Acid
+1.1
+0.9
N.D.
-0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
+0.9
N.D.
+0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
+1.4
N.D.
+0.8
+0.3
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