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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10100 and 10101 are separated by 382 nucleotides
10101 and 10102 are separated by 988 nucleotides
10102 and 10103 are separated by 963 nucleotides
10103 and 10104 are separated by 1303 nucleotides
mRNA_1732: 10100 - Hypothetical Protein, at 63,566 to 64,770
10100
mRNA_1733: 10101 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 65,153 to 66,958
10101
mRNA_1734: 10102 - KOG1721 FOG Zn-finger, at 67,947 to 72,087
10102
mRNA_1735: 10103 - K03235 EF3, TEF3 elongation factor 3, at 73,051 to 76,843
10103
mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78,147 to 80,608
10104
Group
Condition
mRNA
_1732
mRNA
_1733
mRNA
_1734
mRNA
_1735
mRNA
_1736
10100
10101
10102
10103
10104
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
+0.2
-0.0
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.8
-0.2
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-0.8
N.D.
-0.0
growth on oleic acid
YNB Glucose
-0.6
-0.3
+0.0
N.D.
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.0
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
+0.0
+0.0
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
-0.0
N.D.
+0.1
auxotrophy
Dropout Complete
-0.2
-0.5
+0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.0
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.1
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose
-0.3
-0.3
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.2
+0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.2
+0.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.1
+0.3
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.4
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
+0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
-0.1
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.2
N.D.
+0.2
growth on ypd
YPD
+0.7
+0.0
+0.2
N.D.
-0.0
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