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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10103 and 10104 are separated by 1303 nucleotides
10104 and 10105 are separated by 275 nucleotides
10105 and 10106 are separated by 152 nucleotides
10106 and 10107 are separated by 403 nucleotides
mRNA_1735: 10103 - K03235 EF3, TEF3 elongation factor 3, at 73,051 to 76,843
10103
mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78,147 to 80,608
10104
mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80,884 to 82,688
10105
mRNA_1738: 10106 - Hypothetical Protein, at 82,841 to 84,052
10106
mRNA_1739: 10107 - Hypothetical Protein, at 84,456 to 87,207
10107
Group
Condition
mRNA
_1735
mRNA
_1736
mRNA
_1737
mRNA
_1738
mRNA
_1739
10103
10104
10105
10106
10107
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.3
-0.6
-1.0
growth on ypd
YPD
N.D.
-0.0
+0.1
-0.4
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.4
-0.6
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.3
-0.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.1
+0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.1
-0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.3
-1.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.2
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
+0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.3
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.3
-0.1
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.0
+0.1
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
+0.0
-0.2
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.3
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
+0.1
+0.2
+0.0
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
+0.0
+0.1
auxotrophy
Dropout Complete
N.D.
+0.1
+0.3
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+0.4
+0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.1
+0.4
+0.0
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