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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10105 and 10106 are separated by 152 nucleotides
10106 and 10107 are separated by 403 nucleotides
10107 and 10108 are separated by 309 nucleotides
10108 and 10109 are separated by 1013 nucleotides
mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80,884 to 82,688
10105
mRNA_1738: 10106 - Hypothetical Protein, at 82,841 to 84,052
10106
mRNA_1739: 10107 - Hypothetical Protein, at 84,456 to 87,207
10107
mRNA_1740: 10108 - K20828 ZNF143_76, STAF zinc finger protein 143/76, at 87,517 to 89,814
10108
mRNA_1741: 10109 - HMMPfam-Calcipressin-PF04847, at 90,828 to 91,763
10109
Group
Condition
mRNA
_1737
mRNA
_1738
mRNA
_1739
mRNA
_1740
mRNA
_1741
10105
10106
10107
10108
10109
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.6
-1.0
-2.7
+0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.1
+0.3
-0.6
-1.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-0.6
-2.7
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
+0.0
-2.6
+0.5
growth on ypd
YPD
+0.1
-0.4
-0.6
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.4
-0.1
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
+0.1
+0.3
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.6
+0.3
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.1
+0.2
-0.1
-1.0
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.4
-0.1
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
+0.1
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
+0.0
-1.3
+1.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
+0.1
-1.0
+1.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.1
+0.3
+0.4
-0.1
auxotrophy
YNB Glucose
+0.1
+0.0
+0.1
-1.0
+1.1
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
-0.3
-0.8
+0.9
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
+0.0
+0.0
+0.5
auxotrophy
Dropout Complete
+0.3
+0.0
-0.1
-0.4
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.4
-0.3
-0.9
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
+0.0
-0.8
+1.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.2
+0.0
+1.1
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