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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10110 and 10111 are separated by 395 nucleotides
10111 and 10112 are separated by 205 nucleotides
10112 and 10113 are separated by 437 nucleotides
10113 and 10114 are separated by 408 nucleotides
mRNA_1742: 10110 - SUPERFAMILY--SSF48097, at 94,671 to 96,223
10110
mRNA_1743: 10111 - HMMPfam-Protein of unknown function DUF262-PF03235, at 96,619 to 100,637
10111
mRNA_1744: 10112 - Hypothetical Protein, at 100,843 to 102,379
10112
mRNA_1745: 10113 - K09829 ERG2 C-8 sterol isomerase, at 102,817 to 103,817
10113
mRNA_1746: 10114 - KOG2897 DNA-binding protein YL1 and related proteins, at 104,226 to 106,402
10114
Group
Condition
mRNA
_1742
mRNA
_1743
mRNA
_1744
mRNA
_1745
mRNA
_1746
10110
10111
10112
10113
10114
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.1
+0.4
N.D.
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-0.2
N.D.
-0.5
auxotrophy
YNB Glucose
-0.2
-0.1
-0.2
N.D.
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.0
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.0
N.D.
-0.4
auxotrophy
Dropout Complete
-0.2
-0.1
-0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
+0.4
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.1
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.3
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
+0.1
-0.3
N.D.
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.0
-0.3
N.D.
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.1
+0.1
N.D.
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.2
+0.3
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
+0.6
N.D.
-0.2
growth on ypd
YPD
+0.6
-0.1
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
-0.0
N.D.
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.1
+0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.1
+0.4
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
+0.0
+0.1
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
+0.4
N.D.
+0.5
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