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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10112 and 10113 are separated by 437 nucleotides
10113 and 10114 are separated by 408 nucleotides
10114 and 10115 are separated by 586 nucleotides
10115 and 10116 are separated by 477 nucleotides
mRNA_1744: 10112 - Hypothetical Protein, at 100,843 to 102,379
10112
mRNA_1745: 10113 - K09829 ERG2 C-8 sterol isomerase, at 102,817 to 103,817
10113
mRNA_1746: 10114 - KOG2897 DNA-binding protein YL1 and related proteins, at 104,226 to 106,402
10114
mRNA_1747: 10115 - Hypothetical Protein, at 106,989 to 107,598
10115
mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108,076 to 110,507
10116
Group
Condition
mRNA
_1744
mRNA
_1745
mRNA
_1746
mRNA
_1747
mRNA
_1748
10112
10113
10114
10115
10116
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.9
-4.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.7
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.6
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
-0.4
-0.2
-0.1
auxotrophy
YNB Glucose
-0.2
N.D.
-0.6
-0.2
+0.3
auxotrophy
Dropout Complete
-0.2
N.D.
-0.2
-0.5
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
-1.0
+0.2
+0.0
growth on ypd
YPD
-0.1
N.D.
-0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
N.D.
-0.6
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-0.5
+0.7
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
+0.0
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
-0.5
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.1
+0.2
+0.2
growth on oleic acid
YNB Glucose
-0.3
N.D.
+0.4
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
-0.2
+0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.5
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
+0.7
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
N.D.
-0.2
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
-0.1
+0.4
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.4
N.D.
+0.5
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
+0.9
+0.7
+0.3
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