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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10114 and 10115 are separated by 586 nucleotides
10115 and 10116 are separated by 477 nucleotides
10116 and 10117 are separated by 543 nucleotides
10117 and 10118 are separated by 960 nucleotides
mRNA_1746: 10114 - KOG2897 DNA-binding protein YL1 and related proteins, at 104,226 to 106,402
10114
mRNA_1747: 10115 - Hypothetical Protein, at 106,989 to 107,598
10115
mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108,076 to 110,507
10116
mRNA_1749: 10117 - Hypothetical Protein, at 111,051 to 112,240
10117
mRNA_1750: 10118 - K16185 RRAGA_B Ras-related GTP-binding protein A/B, at 113,201 to 114,530
10118
Group
Condition
mRNA
_1746
mRNA
_1747
mRNA
_1748
mRNA
_1749
mRNA
_1750
10114
10115
10116
10117
10118
ypd buoyancy
40 hrs No Buoyancy Separation
+0.9
-4.0
+0.0
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
-0.4
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.1
-0.2
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-1.0
+0.2
+0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.2
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose
-0.6
-0.2
+0.3
-0.1
N.D.
auxotrophy
Dropout Complete
-0.2
-0.5
+0.3
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.1
+0.3
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.4
-0.1
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.7
+0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
+0.1
+0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.7
+0.1
-0.6
N.D.
growth on ypd
YPD
-0.1
+0.1
-0.1
+0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.2
-0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.1
+0.3
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.0
+0.6
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
+0.5
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.4
+0.1
+0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
+0.7
+0.3
-0.0
N.D.
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