Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 10115 and 10116 are separated by 477 nucleotides10116 and 10117 are separated by 543 nucleotides10117 and 10118 are separated by 960 nucleotides10118 and 10119 are separated by 144 nucleotides mRNA_1747: 10115 - Hypothetical Protein, at 106,989 to 107,598 10115 mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108,076 to 110,507 10116 mRNA_1749: 10117 - Hypothetical Protein, at 111,051 to 112,240 10117 mRNA_1750: 10118 - K16185 RRAGA_B Ras-related GTP-binding protein A/B, at 113,201 to 114,530 10118 mRNA_1751: 10119 - KOG2726 Mitochondrial polypeptide chain release factor, at 114,675 to 115,608 10119
Group Condition mRNA_1747 mRNA_1748 mRNA_1749 mRNA_1750 mRNA_1751
10115 10116 10117 10118 10119
ypd buoyancy 40 hrs No Buoyancy Separation -4.0 +0.0 -0.6 N.D. +1.0
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.3 +0.1 N.D. -0.8
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.2 -0.3 N.D. -0.1
auxotrophy Dropout Complete -0.5 +0.3 +0.0 N.D. -0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.4 -0.4 N.D. +0.6
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.0 +0.0 N.D. -0.5
auxotrophy YNB Glucose -0.2 +0.3 -0.1 N.D. +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 -0.1 -0.1 N.D. +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.7 +0.1 -0.6 N.D. -0.0
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.3 -0.0 N.D. -0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 -0.1 -0.2 N.D. +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 +0.1 -0.1 N.D. -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.0 +0.6 N.D. -0.2
growth on oleic acid YNB Oleic Acid +0.2 +0.2 +0.1 N.D. +0.0
growth on ricinoleic acid YNB Glucose +0.1 +0.3 +0.2 N.D. -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.7 +0.2 -0.3 N.D. +0.0
growth on oleic acid YNB Glucose +0.1 +0.3 -0.2 N.D. +0.4
ypd buoyancy 40 hrs Low Buoyancy +0.4 +0.1 +0.4 N.D. -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.7 +0.3 -0.0 N.D. -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.4 +0.5 +0.1 N.D. -0.0
growth on ypd YPD +0.1 -0.1 +0.3 N.D. +0.7
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