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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10116 and 10117 are separated by 543 nucleotides
10117 and 10118 are separated by 960 nucleotides
10118 and 10119 are separated by 144 nucleotides
10119 and 10120 are separated by 163 nucleotides
mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108,076 to 110,507
10116
mRNA_1749: 10117 - Hypothetical Protein, at 111,051 to 112,240
10117
mRNA_1750: 10118 - K16185 RRAGA_B Ras-related GTP-binding protein A/B, at 113,201 to 114,530
10118
mRNA_1751: 10119 - KOG2726 Mitochondrial polypeptide chain release factor, at 114,675 to 115,608
10119
mRNA_1752: 10120 - K15363 FAN1, MTMR15 fanconi-associated nuclease 1, at 115,772 to 119,229
10120
Group
Condition
mRNA
_1748
mRNA
_1749
mRNA
_1750
mRNA
_1751
mRNA
_1752
10116
10117
10118
10119
10120
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
N.D.
-0.8
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.0
N.D.
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.6
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
N.D.
+0.1
-0.1
auxotrophy
Dropout Complete
+0.3
+0.0
N.D.
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.1
N.D.
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.4
N.D.
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.0
N.D.
-0.2
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
N.D.
+0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.0
N.D.
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
N.D.
+0.5
-0.0
auxotrophy
YNB Glucose
+0.3
-0.1
N.D.
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
+0.3
+0.2
N.D.
-0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.4
N.D.
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.1
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.6
N.D.
-0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.6
N.D.
+1.0
+0.2
growth on oleic acid
YNB Glucose
+0.3
-0.2
N.D.
+0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.1
N.D.
-0.0
+0.3
growth on ypd
YPD
-0.1
+0.3
N.D.
+0.7
-0.0
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