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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10120 and 10121 are separated by 278 nucleotides
10121 and 10122 are separated by 36 nucleotides
10122 and 10123 are separated by 128 nucleotides
10123 and 10124 are separated by 157 nucleotides
mRNA_1752: 10120 - K15363 FAN1, MTMR15 fanconi-associated nuclease 1, at 115,772 to 119,229
10120
mRNA_1753: 10121 - BLAST ubiquitin ligase SCF complex subunit Cullin [Rhizocto..., at 119,508 to 121,647
10121
mRNA_1754: 10122 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 121,684 to 123,500
10122
mRNA_1755: 10123 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 123,629 to 124,708
10123
mRNA_1756: 10124 - KOG2821 RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A, at 124,866 to 126,194
10124
Group
Condition
mRNA
_1752
mRNA
_1753
mRNA
_1754
mRNA
_1755
mRNA
_1756
10120
10121
10122
10123
10124
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.0
+0.2
-1.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
+0.0
-0.4
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
+0.0
-0.3
-0.3
growth on ypd
YPD
-0.0
-0.1
-0.4
+0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.4
+0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.4
-0.4
+0.7
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
-0.2
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.3
+0.7
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
+0.3
+0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.0
+0.2
+0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
-0.2
+1.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
+0.1
+0.5
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.0
-0.1
+1.4
+0.3
auxotrophy
Dropout Complete
-0.1
-0.2
+0.1
+1.8
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.1
-0.0
+1.6
+0.1
auxotrophy
YNB Glucose
+0.0
-0.0
+0.0
+1.8
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.0
+0.2
+1.6
+0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.2
+2.3
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-0.1
+2.2
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
+0.0
+3.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.3
-0.3
+4.4
-0.0
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