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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10125 and 10126 are separated by 706 nucleotides
10126 and 10127 are separated by 1682 nucleotides
10127 and 10128 are separated by 429 nucleotides
10128 and 10129 are separated by 3523 nucleotides
mRNA_1757: 10125 - KOG1426 FOG RCC1 domain, at 126,348 to 129,051
10125
mRNA_1758: 10126 - KOG2998 Uncharacterized conserved protein, at 129,758 to 131,068
10126
mRNA_1759: 10127 - K13345 PEX12, PAF3 peroxin-12, at 132,751 to 134,282
10127
mRNA_1760: 10128 - KOG0940 Ubiquitin protein ligase RSP5/NEDD4, at 134,712 to 138,303
10128
mRNA_1761: 10129 - K07189 PPP1R3 protein phosphatase 1 regulatory subunit 3A/B/C/D/E, at 141,827 to 142,144
10129
Group
Condition
mRNA
_1757
mRNA
_1758
mRNA
_1759
mRNA
_1760
mRNA
_1761
10125
10126
10127
10128
10129
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.7
N.D.
+0.1
-1.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
N.D.
+0.2
-0.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
N.D.
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
N.D.
+0.3
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.7
N.D.
-0.3
-1.1
growth on oleic acid
YNB Glucose
-0.2
+0.0
N.D.
+0.1
-0.2
auxotrophy
Dropout Complete
-0.3
-0.6
N.D.
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
N.D.
+0.0
+0.3
auxotrophy
YNB Glucose
-0.1
-0.3
N.D.
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.4
N.D.
+0.0
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
N.D.
-0.1
+0.6
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.4
N.D.
-0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.4
N.D.
+0.2
-0.2
growth on ypd
YPD
+0.3
-0.2
N.D.
+0.2
+0.5
growth on ricinoleic acid
YNB Glucose
-0.0
+0.5
N.D.
+0.5
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.3
N.D.
+0.1
+1.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.8
N.D.
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.5
N.D.
-0.1
+1.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
N.D.
+0.3
+1.8
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