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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10134 and 10135 are separated by 364 nucleotides
10135 and 10136 are separated by 203 nucleotides
10136 and 10137 are separated by 756 nucleotides
10137 and 10138 are separated by 355 nucleotides
mRNA_1766: 10134 - K03097 CSNK2A casein kinase II subunit alpha, at 151,982 to 154,408
10134
mRNA_1767: 10135 - HMMPfam-F-box-like-PF12937, at 154,773 to 156,142
10135
mRNA_1768: 10136 - K01858 INO1, ISYNA1 myo-inositol-1-phosphate synthase, at 156,346 to 158,351
10136
mRNA_1769: 10137 - Interpro F-box-like 0, at 159,108 to 161,176
10137
mRNA_1770: 10138 - HMMPfam-F-box-like-PF12937, at 161,532 to 163,380
10138
Group
Condition
mRNA
_1766
mRNA
_1767
mRNA
_1768
mRNA
_1769
mRNA
_1770
10134
10135
10136
10137
10138
growth on oleic acid
YNB Oleic Acid
-0.1
-0.5
-0.3
-0.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
-0.4
-0.4
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.3
-0.2
-0.0
-0.2
auxotrophy
Dropout Complete
+0.3
-0.0
-0.7
-0.1
+0.0
growth on ypd
YPD
-0.1
-0.1
-0.5
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
-1.0
-0.1
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.1
-0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.8
-1.1
+0.3
-0.5
auxotrophy
YNB Glucose
+0.1
+0.5
-0.4
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.3
-0.4
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.5
-0.6
-0.0
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.2
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.0
-0.1
+0.0
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.2
+0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.2
-0.1
+0.1
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+1.0
-0.6
+0.2
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.6
-0.2
+0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.7
+0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.4
+0.3
+0.2
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.7
-0.3
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.7
-0.4
+0.2
+0.3
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