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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10137 and 10138 are separated by 355 nucleotides
10138 and 10139 are separated by 144 nucleotides
10139 and 10140 are separated by 945 nucleotides
10140 and 10141 are separated by 749 nucleotides
mRNA_1769: 10137 - Interpro F-box-like 0, at 159,108 to 161,176
10137
mRNA_1770: 10138 - HMMPfam-F-box-like-PF12937, at 161,532 to 163,380
10138
mRNA_1771: 10139 - K14312 NUP155, NUP170, NUP157 nuclear pore complex protein Nup155, at 163,525 to 168,544
10139
mRNA_1772: 10140 - K01480 speB agmatinase, at 169,490 to 170,600
10140
mRNA_1773: 10141 - Hypothetical Protein, at 171,350 to 172,928
10141
Group
Condition
mRNA
_1769
mRNA
_1770
mRNA
_1771
mRNA
_1772
mRNA
_1773
10137
10138
10139
10140
10141
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.7
N.D.
-0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.2
N.D.
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.5
N.D.
-0.0
-0.5
auxotrophy
Dropout Complete
-0.1
+0.0
N.D.
+0.0
-0.0
growth on oleic acid
YNB Glucose
-0.1
+0.1
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
N.D.
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.5
N.D.
+0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
N.D.
+0.3
+0.2
growth on ypd
YPD
+0.1
+0.3
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.5
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose
+0.1
-0.1
N.D.
+0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.5
N.D.
-0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.5
N.D.
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.6
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
N.D.
+0.5
+0.5
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