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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10139 and 10140 are separated by 945 nucleotides
10140 and 10141 are separated by 749 nucleotides
10141 and 10142 are separated by 252 nucleotides
10142 and 10143 are separated by 285 nucleotides
mRNA_1771: 10139 - K14312 NUP155, NUP170, NUP157 nuclear pore complex protein Nup155, at 163,525 to 168,544
10139
mRNA_1772: 10140 - K01480 speB agmatinase, at 169,490 to 170,600
10140
mRNA_1773: 10141 - Hypothetical Protein, at 171,350 to 172,928
10141
mRNA_1774: 10142 - Hypothetical Protein, at 173,181 to 173,906
10142
mRNA_1775: 10143 - KOG1289 Amino acid transporters, at 174,192 to 176,320
10143
Group
Condition
mRNA
_1771
mRNA
_1772
mRNA
_1773
mRNA
_1774
mRNA
_1775
10139
10140
10141
10142
10143
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.3
-0.6
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.5
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.1
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.1
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
+0.3
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.2
-0.2
+0.0
auxotrophy
Dropout Complete
N.D.
+0.0
-0.0
+0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.3
-0.3
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.1
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
+0.2
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.1
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.3
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose
N.D.
+0.4
+0.2
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.5
+0.5
-0.1
-0.3
growth on ypd
YPD
N.D.
+0.1
+0.0
+0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.1
+0.3
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.3
+0.5
+0.1
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