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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10142 and 10143 are separated by 285 nucleotides
10143 and 10144 are separated by 983 nucleotides
10144 and 10145 are separated by 622 nucleotides
10145 and 10146 are separated by 559 nucleotides
mRNA_1774: 10142 - Hypothetical Protein, at 173,181 to 173,906
10142
mRNA_1775: 10143 - KOG1289 Amino acid transporters, at 174,192 to 176,320
10143
mRNA_1776: 10144 - K01869 LARS, leuS leucyl-tRNA synthetase, at 177,304 to 181,065
10144
mRNA_1777: 10145 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 181,688 to 183,339
10145
mRNA_1778: 10146 - HMMPfam-Protein of unknown function (DUF3140)-PF11338, at 183,899 to 184,487
10146
Group
Condition
mRNA
_1774
mRNA
_1775
mRNA
_1776
mRNA
_1777
mRNA
_1778
10142
10143
10144
10145
10146
auxotrophy
Dropout Complete
+0.1
-0.3
N.D.
-0.6
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
N.D.
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.2
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.1
N.D.
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.0
-0.2
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
N.D.
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
N.D.
+0.3
-0.3
growth on oleic acid
YNB Glucose
-0.0
-0.1
N.D.
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.0
-0.1
N.D.
-0.2
-0.1
auxotrophy
YNB Glucose
+0.2
-0.3
N.D.
-0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.0
N.D.
+0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
N.D.
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
N.D.
+0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
N.D.
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
N.D.
+0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
N.D.
+0.3
-0.1
growth on ypd
YPD
+0.5
+0.1
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.4
N.D.
+0.1
+0.4
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