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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10144 and 10145 are separated by 622 nucleotides
10145 and 10146 are separated by 559 nucleotides
10146 and 10147 are separated by 571 nucleotides
10147 and 10148 are separated by 675 nucleotides
mRNA_1776: 10144 - K01869 LARS, leuS leucyl-tRNA synthetase, at 177,304 to 181,065
10144
mRNA_1777: 10145 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 181,688 to 183,339
10145
mRNA_1778: 10146 - HMMPfam-Protein of unknown function (DUF3140)-PF11338, at 183,899 to 184,487
10146
mRNA_1779: 10147 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 185,059 to 187,419
10147
mRNA_1780: 10148 - K03097 CSNK2A casein kinase II subunit alpha, at 188,095 to 190,025
10148
Group
Condition
mRNA
_1776
mRNA
_1777
mRNA
_1778
mRNA
_1779
mRNA
_1780
10144
10145
10146
10147
10148
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.2
-1.1
N.D.
auxotrophy
Dropout Complete
N.D.
-0.6
-0.3
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
-0.2
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.3
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.1
-0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose
N.D.
-0.3
+0.0
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.3
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-0.3
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.3
+0.5
N.D.
growth on ypd
YPD
N.D.
+0.1
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
+0.3
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.0
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
-0.0
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.4
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
+0.2
+0.6
N.D.
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