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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10163 and 10164 are separated by 214 nucleotides
10164 and 10165 are separated by 110 nucleotides
10165 and 10166 are separated by 513 nucleotides
10166 and 10167 are separated by 149 nucleotides
mRNA_1795: 10163 - K12844 PRPF31 U4/U6 small nuclear ribonucleoprotein PRP31, at 217,358 to 219,404
10163
mRNA_1796: 10164 - K10878 SPO11 meiotic recombination protein SPO11, at 219,619 to 222,270
10164
mRNA_1797: 10165 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 222,381 to 224,884
10165
mRNA_1798: 10166 - KOG0725 Reductases with broad range of substrate specificities, at 225,398 to 226,777
10166
mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226,927 to 229,515
10167
Group
Condition
mRNA
_1795
mRNA
_1796
mRNA
_1797
mRNA
_1798
mRNA
_1799
10163
10164
10165
10166
10167
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.6
-0.6
-0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.6
-0.5
-0.1
-0.4
auxotrophy
Dropout Complete
N.D.
-0.7
-0.3
-0.6
-0.2
growth on oleic acid
YNB Glucose
N.D.
-1.0
-0.0
+0.0
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.7
-0.3
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.9
-0.1
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.5
-0.4
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.6
-0.2
-0.2
+0.0
auxotrophy
YNB Glucose
N.D.
-0.4
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.3
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.1
-0.1
-0.1
growth on ypd
YPD
N.D.
+0.2
+0.2
-0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.5
-0.3
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.3
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
+0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.1
+0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.4
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+1.0
-0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.9
+0.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.7
+0.1
+0.1
-0.1
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