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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10172 and 10173 are separated by 910 nucleotides
10173 and 10174 are separated by 589 nucleotides
10174 and 10175 are separated by 3602 nucleotides
10175 and 10176 are separated by 2124 nucleotides
mRNA_1804: 10172 - Hypothetical Protein, at 241,788 to 243,277
10172
mRNA_1805: 10173 - K00616 E2.2.1.2, talA, talB transaldolase, at 244,188 to 245,888
10173
mRNA_1806: 10174 - BLAST related to C2H2 zinc finger protein [Ustilago hordei], at 246,478 to 247,533
10174
mRNA_1807: 10175 - K09403 FOXJ2_3 forkhead box protein J2/3, at 251,136 to 255,270
10175
mRNA_1808: 10176 - Hypothetical Protein, at 257,395 to 258,066
10176
Group
Condition
mRNA
_1804
mRNA
_1805
mRNA
_1806
mRNA
_1807
mRNA
_1808
10172
10173
10174
10175
10176
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
N.D.
-0.7
-0.0
-0.0
auxotrophy
YNB Glucose
-0.7
N.D.
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.8
+0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.1
-0.0
-0.2
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.7
-0.3
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-1.1
N.D.
+1.1
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
-0.4
+0.0
-0.1
auxotrophy
Dropout Complete
-1.2
N.D.
+0.9
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
N.D.
+1.4
+0.1
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
-0.9
+0.2
+1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.9
N.D.
+0.9
-0.3
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.1
+0.2
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
N.D.
+0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.3
+0.2
+0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
-0.5
-0.2
+1.1
growth on oleic acid
YNB Oleic Acid
+0.7
N.D.
+0.3
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+1.0
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
+0.5
N.D.
+0.9
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
-0.4
+0.2
+0.8
growth on ypd
YPD
+1.6
N.D.
+0.1
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.9
N.D.
-0.2
+0.1
+0.6
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