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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10174 and 10175 are separated by 3602 nucleotides
10175 and 10176 are separated by 2124 nucleotides
10176 and 10177 are separated by 777 nucleotides
10177 and 10178 are separated by 457 nucleotides
mRNA_1806: 10174 - BLAST related to C2H2 zinc finger protein [Ustilago hordei], at 246,478 to 247,533
10174
mRNA_1807: 10175 - K09403 FOXJ2_3 forkhead box protein J2/3, at 251,136 to 255,270
10175
mRNA_1808: 10176 - Hypothetical Protein, at 257,395 to 258,066
10176
mRNA_1809: 10177 - Hypothetical Protein, at 258,844 to 259,797
10177
mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260,255 to 261,213
10178
Group
Condition
mRNA
_1806
mRNA
_1807
mRNA
_1808
mRNA
_1809
mRNA
_1810
10174
10175
10176
10177
10178
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.0
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.8
+0.0
+0.2
N.D.
-0.1
growth on ypd
YPD
+0.1
-0.2
-0.5
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.2
N.D.
-0.0
growth on oleic acid
YNB Glucose
+0.7
-0.3
-0.6
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.0
-0.1
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose
-0.1
-0.1
-0.2
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
+0.5
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.2
+1.1
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
+0.6
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.7
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.2
+1.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.9
-0.1
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.2
+0.8
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.4
+0.1
-0.8
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+1.1
-0.2
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
-0.0
+0.2
N.D.
-0.0
auxotrophy
Dropout Complete
+0.9
-0.2
+0.4
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.9
-0.3
+0.6
N.D.
+0.1
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