Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 10175 and 10176 are separated by 2124 nucleotides10176 and 10177 are separated by 777 nucleotides10177 and 10178 are separated by 457 nucleotides10178 and 10179 are separated by 359 nucleotides mRNA_1807: 10175 - K09403 FOXJ2_3 forkhead box protein J2/3, at 251,136 to 255,270 10175 mRNA_1808: 10176 - Hypothetical Protein, at 257,395 to 258,066 10176 mRNA_1809: 10177 - Hypothetical Protein, at 258,844 to 259,797 10177 mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260,255 to 261,213 10178 mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261,573 to 264,889 10179
Group Condition mRNA_1807 mRNA_1808 mRNA_1809 mRNA_1810 mRNA_1811
10175 10176 10177 10178 10179
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 -0.8 N.D. +0.3 -0.8
growth on oleic acid YNB Glucose -0.3 -0.6 N.D. -0.1 -0.2
growth on ricinoleic acid YNB Glucose -0.1 -0.3 N.D. -0.1 -0.5
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.2 N.D. -0.0 -0.5
growth on oleic acid YNB Oleic Acid -0.2 -0.1 N.D. -0.3 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 -0.0 N.D. +0.1 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.6 N.D. -0.3 -0.8
ypd buoyancy 40 hrs High Buoyancy +0.0 +0.2 N.D. -0.1 -0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 +0.7 N.D. -0.4 -0.7
growth on ypd YPD -0.2 -0.5 N.D. -0.1 +0.6
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 +0.8 N.D. -0.1 -0.9
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 -0.0 N.D. -0.1 +0.0
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.1 N.D. +0.3 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.0 -0.1 N.D. +0.2 -0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.2 +0.5 N.D. -0.5 +0.3
auxotrophy YNB Glucose -0.1 -0.2 N.D. +0.2 +0.8
auxotrophy YNB Glucose 75mM Arginine -0.3 +0.6 N.D. +0.1 +0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.2 +1.1 N.D. -0.3 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 +1.2 N.D. -0.2 -0.4
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 +0.2 N.D. -0.0 +0.6
auxotrophy Dropout Complete -0.2 +0.4 N.D. +0.2 +0.4
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