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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10177 and 10178 are separated by 457 nucleotides
10178 and 10179 are separated by 359 nucleotides
10179 and 10180 are separated by 262 nucleotides
10180 and 10181 are separated by 970 nucleotides
mRNA_1809: 10177 - Hypothetical Protein, at 258,844 to 259,797
10177
mRNA_1810: 10178 - HMMPfam-Predicted SAM-dependent RNA methyltransferase-PF04252, at 260,255 to 261,213
10178
mRNA_1811: 10179 - HMMPfam-Centrosome microtubule-binding domain of Cep57-PF06657, at 261,573 to 264,889
10179
mRNA_1812: 10180 - Hypothetical Protein, at 265,152 to 268,202
10180
mRNA_1813: 10181 - K04352 RASA1, RASGAP Ras GTPase-activating protein 1, at 269,173 to 274,604
10181
Group
Condition
mRNA
_1809
mRNA
_1810
mRNA
_1811
mRNA
_1812
mRNA
_1813
10177
10178
10179
10180
10181
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.8
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.7
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.5
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.5
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-0.8
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
-0.4
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.9
+0.2
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.5
+0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
+0.2
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
-0.5
-0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
+0.3
-0.0
+0.1
growth on ypd
YPD
N.D.
-0.1
+0.6
-0.2
-0.5
growth on oleic acid
YNB Glucose
N.D.
-0.1
-0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.0
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.0
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.3
-0.3
+0.3
auxotrophy
Dropout Complete
N.D.
+0.2
+0.4
-0.2
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
+0.6
-0.0
+0.1
auxotrophy
YNB Glucose
N.D.
+0.2
+0.8
-0.3
+0.1
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