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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10183 and 10184 are separated by 739 nucleotides
10184 and 10185 are separated by 357 nucleotides
10185 and 10186 are separated by 358 nucleotides
10186 and 10187 are separated by 284 nucleotides
mRNA_1815: 10183 - K20777 EXD2 exonuclease 3'-5' domain-containing protein 2, at 280,165 to 281,761
10183
mRNA_1816: 10184 - K08178 JEN MFS transporter, SHS family, lactate transporter, at 282,501 to 284,889
10184
mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285,247 to 286,558
10185
mRNA_1818: 10186 - Hypothetical Protein, at 286,917 to 287,591
10186
mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287,876 to 290,451
10187
Group
Condition
mRNA
_1815
mRNA
_1816
mRNA
_1817
mRNA
_1818
mRNA
_1819
10183
10184
10185
10186
10187
auxotrophy
YNB Glucose
+0.1
+0.4
-2.6
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.3
-2.4
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.3
-1.4
-0.0
-0.1
auxotrophy
Dropout Complete
+0.3
+0.3
-2.2
+0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.0
-1.4
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.3
-1.9
-0.2
-0.1
growth on oleic acid
YNB Glucose
+0.3
-0.3
-0.9
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.1
-1.9
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.0
-0.7
-0.1
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
-1.7
+0.5
+0.2
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
-1.8
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.2
+0.1
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.4
-0.4
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
-0.0
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.4
+0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.5
+0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
+0.1
-0.9
-0.1
+0.1
growth on ypd
YPD
+0.2
-0.4
+0.3
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.3
-0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
+0.1
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.2
-0.4
+0.1
+0.1
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