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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10184 and 10185 are separated by 357 nucleotides
10185 and 10186 are separated by 358 nucleotides
10186 and 10187 are separated by 284 nucleotides
10187 and 10188 are separated by 527 nucleotides
mRNA_1816: 10184 - K08178 JEN MFS transporter, SHS family, lactate transporter, at 282,501 to 284,889
10184
mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285,247 to 286,558
10185
mRNA_1818: 10186 - Hypothetical Protein, at 286,917 to 287,591
10186
mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287,876 to 290,451
10187
mRNA_1820: 10188 - Hypothetical Protein, at 290,979 to 291,681
10188
Group
Condition
mRNA
_1816
mRNA
_1817
mRNA
_1818
mRNA
_1819
mRNA
_1820
10184
10185
10186
10187
10188
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-2.4
-0.1
-0.3
-0.0
auxotrophy
YNB Glucose
+0.4
-2.6
-0.3
-0.1
+0.2
auxotrophy
Dropout Complete
+0.3
-2.2
+0.0
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-1.4
-0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-1.9
-0.1
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.9
-0.4
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.7
-0.1
-0.9
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-1.9
-0.2
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
-1.4
+0.1
-0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-1.8
-0.2
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-1.7
+0.5
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.4
+0.2
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.1
-0.1
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.4
+0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.9
-0.1
+0.1
+0.3
growth on ypd
YPD
-0.4
+0.3
+0.0
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.4
+0.1
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.5
+0.0
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
-0.2
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.4
+0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.1
+0.0
+0.4
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