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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10186 and 10187 are separated by 284 nucleotides
10187 and 10188 are separated by 527 nucleotides
10188 and 10189 are separated by 32 nucleotides
10189 and 10190 are separated by 697 nucleotides
mRNA_1818: 10186 - Hypothetical Protein, at 286,917 to 287,591
10186
mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287,876 to 290,451
10187
mRNA_1820: 10188 - Hypothetical Protein, at 290,979 to 291,681
10188
mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291,714 to 294,112
10189
mRNA_1822: 10190 - KOG0627 Heat shock transcription factor, at 294,810 to 296,545
10190
Group
Condition
mRNA
_1818
mRNA
_1819
mRNA
_1820
mRNA
_1821
mRNA
_1822
10186
10187
10188
10189
10190
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.9
-0.1
-0.5
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-0.2
+0.0
-0.7
growth on oleic acid
YNB Glucose
-0.4
-0.2
-0.1
-0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.4
-0.0
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.3
+0.2
-0.4
-0.5
auxotrophy
Dropout Complete
+0.0
-0.2
+0.1
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.3
-0.0
+0.0
+0.0
auxotrophy
YNB Glucose
-0.3
-0.1
+0.2
+0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.1
-0.1
+0.1
+0.0
growth on ypd
YPD
+0.0
-0.4
-0.1
+0.3
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.1
+0.3
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
+0.4
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
+0.1
-0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
+0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
-0.0
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
+0.0
+0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
+0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
+0.6
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.2
+0.1
+0.1
+0.5
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