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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10190 and 10191 are separated by 1982 nucleotides
10191 and 10192 are separated by 294 nucleotides
10192 and 10193 are separated by 659 nucleotides
10193 and 10194 are separated by 224 nucleotides
mRNA_1822: 10190 - KOG0627 Heat shock transcription factor, at 294,810 to 296,545
10190
mRNA_1823: 10191 - KOG3783 Uncharacterized conserved protein, at 298,528 to 301,287
10191
mRNA_1824: 10192 - Hypothetical Protein, at 301,582 to 303,988
10192
mRNA_1825: 10193 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 304,648 to 308,455
10193
mRNA_1826: 10194 - Hypothetical Protein, at 308,680 to 309,068
10194
Group
Condition
mRNA
_1822
mRNA
_1823
mRNA
_1824
mRNA
_1825
mRNA
_1826
10190
10191
10192
10193
10194
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.3
+0.0
-0.6
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
-0.5
-0.9
-0.6
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.6
-0.5
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.5
-0.5
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.2
+0.1
-1.4
-0.3
auxotrophy
Dropout Complete
-0.4
-0.3
-0.3
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.3
-0.1
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.2
-0.0
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-0.2
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
+0.0
+0.3
-0.3
-0.4
-0.5
growth on oleic acid
YNB Glucose
-0.2
+0.5
-0.4
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
-0.1
-0.2
-0.3
auxotrophy
YNB Glucose
-0.2
-0.0
-0.2
-0.1
-0.1
growth on ypd
YPD
+0.0
-0.2
-0.3
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
-0.3
-0.2
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
+0.4
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.2
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.1
+0.1
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.3
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.2
+0.3
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.1
+0.2
+0.1
+0.0
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