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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10192 and 10193 are separated by 659 nucleotides
10193 and 10194 are separated by 224 nucleotides
10194 and 10195 are separated by 1252 nucleotides
10195 and 10196 are separated by 111 nucleotides
mRNA_1824: 10192 - Hypothetical Protein, at 301,582 to 303,988
10192
mRNA_1825: 10193 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 304,648 to 308,455
10193
mRNA_1826: 10194 - Hypothetical Protein, at 308,680 to 309,068
10194
mRNA_1827: 10195 - KOG3958 Putative dynamitin, at 310,321 to 312,024
10195
mRNA_1828: 10196 - Hypothetical Protein, at 312,136 to 314,530
10196
Group
Condition
mRNA
_1824
mRNA
_1825
mRNA
_1826
mRNA
_1827
mRNA
_1828
10192
10193
10194
10195
10196
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.9
-0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.6
-0.5
-0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-1.4
-0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.2
-0.6
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.4
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.6
-0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.2
-0.4
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
-0.2
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.0
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
-0.3
N.D.
N.D.
growth on ypd
YPD
-0.3
+0.1
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
-0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.3
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.0
N.D.
N.D.
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