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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10196 and 10197 are separated by 356 nucleotides
10197 and 10198 are separated by 279 nucleotides
10198 and 10199 are separated by 295 nucleotides
10199 and 10200 are separated by 450 nucleotides
mRNA_1828: 10196 - Hypothetical Protein, at 312,136 to 314,530
10196
mRNA_1829: 10197 - K20238 E2.1.1.317 sphingolipid C9-methyltransferase, at 314,887 to 317,031
10197
mRNA_1830: 10198 - K00809 DHPS, dys deoxyhypusine synthase, at 317,311 to 318,689
10198
mRNA_1831: 10199 - KOG3274 Uncharacterized conserved protein, AMMECR1, at 318,985 to 319,920
10199
mRNA_1832: 10200 - K11188 PRDX6 peroxiredoxin 6, 1-Cys peroxiredoxin, at 320,371 to 321,858
10200
Group
Condition
mRNA
_1828
mRNA
_1829
mRNA
_1830
mRNA
_1831
mRNA
_1832
10196
10197
10198
10199
10200
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
N.D.
-1.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-1.3
N.D.
-0.5
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
N.D.
-0.8
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
N.D.
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
N.D.
-0.4
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.9
N.D.
+0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
N.D.
-0.8
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.4
N.D.
-0.3
+0.5
growth on oleic acid
YNB Glucose
N.D.
-0.0
N.D.
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.7
N.D.
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
N.D.
-0.2
+0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
N.D.
+0.7
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
N.D.
-0.0
+0.4
growth on ypd
YPD
N.D.
+0.4
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
N.D.
+0.4
+0.5
auxotrophy
YNB Glucose
N.D.
-0.1
N.D.
+0.3
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.8
N.D.
-0.2
+0.2
auxotrophy
Dropout Complete
N.D.
+0.2
N.D.
+0.4
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
N.D.
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+1.1
N.D.
-0.2
+0.2
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