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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10201 and 10202 are separated by 176 nucleotides
10202 and 10203 are separated by 380 nucleotides
10203 and 10204 are separated by 1661 nucleotides
10204 and 10205 are separated by 495 nucleotides
mRNA_1833: 10201 - Hypothetical Protein, at 322,426 to 322,877
10201
mRNA_1834: 10202 - Hypothetical Protein, at 323,054 to 324,268
10202
mRNA_1835: 10203 - K10601 SYVN1, HRD1 E3 ubiquitin-protein ligase synoviolin, at 324,649 to 327,501
10203
mRNA_1836: 10204 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 329,163 to 331,495
10204
mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331,991 to 335,971
10205
Group
Condition
mRNA
_1833
mRNA
_1834
mRNA
_1835
mRNA
_1836
mRNA
_1837
10201
10202
10203
10204
10205
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
-1.7
-0.3
-1.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-1.3
-0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.2
-0.1
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
-1.0
-0.0
-0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.2
-0.0
-0.8
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-1.0
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.0
-0.3
-0.2
-0.4
auxotrophy
YNB Glucose
N.D.
+0.4
-1.0
-0.4
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
-1.0
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-1.1
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.7
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.9
-0.3
+0.3
auxotrophy
Dropout Complete
N.D.
+0.1
-0.9
-0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.8
-0.9
+0.3
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
-0.7
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
-0.3
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+1.0
+0.1
-0.5
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.7
-0.0
-0.1
-0.2
growth on ypd
YPD
N.D.
-0.2
+0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
+0.3
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.5
-0.2
+0.1
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