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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10203 and 10204 are separated by 1661 nucleotides
10204 and 10205 are separated by 495 nucleotides
10205 and 10206 are separated by 433 nucleotides
10206 and 10207 are separated by 100 nucleotides
mRNA_1835: 10203 - K10601 SYVN1, HRD1 E3 ubiquitin-protein ligase synoviolin, at 324,649 to 327,501
10203
mRNA_1836: 10204 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 329,163 to 331,495
10204
mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331,991 to 335,971
10205
mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336,405 to 337,627
10206
mRNA_1839: 10207 - Hypothetical Protein, at 337,728 to 339,625
10207
Group
Condition
mRNA
_1835
mRNA
_1836
mRNA
_1837
mRNA
_1838
mRNA
_1839
10203
10204
10205
10206
10207
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.7
-0.3
-1.1
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
-0.2
-0.9
N.D.
-0.1
auxotrophy
YNB Glucose
-1.0
-0.4
-0.1
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.0
-0.7
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
+0.3
-0.8
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-1.0
-0.2
-0.1
N.D.
-0.1
auxotrophy
Dropout Complete
-0.9
-0.0
+0.2
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-1.1
-0.0
+0.2
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
-0.9
N.D.
+0.1
growth on oleic acid
YNB Glucose
-1.0
-0.1
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.9
-0.3
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
-0.4
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-0.7
-0.0
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
-0.8
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.5
-0.5
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-0.2
+0.2
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.2
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
-0.2
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
-0.4
N.D.
+0.3
growth on ypd
YPD
+0.3
+0.2
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.2
+0.1
N.D.
+0.3
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