Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 10203 and 10204 are separated by 1661 nucleotides10204 and 10205 are separated by 495 nucleotides10205 and 10206 are separated by 433 nucleotides10206 and 10207 are separated by 100 nucleotides mRNA_1835: 10203 - K10601 SYVN1, HRD1 E3 ubiquitin-protein ligase synoviolin, at 324,649 to 327,501 10203 mRNA_1836: 10204 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 329,163 to 331,495 10204 mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331,991 to 335,971 10205 mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336,405 to 337,627 10206 mRNA_1839: 10207 - Hypothetical Protein, at 337,728 to 339,625 10207
Group Condition mRNA_1835 mRNA_1836 mRNA_1837 mRNA_1838 mRNA_1839
10203 10204 10205 10206 10207
growth on ricinoleic acid YNB Ricinoleic Acid -1.7 -0.3 -1.1 N.D. +0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -1.3 -0.2 -0.9 N.D. -0.1
auxotrophy YNB Glucose -1.0 -0.4 -0.1 N.D. -0.3
facs on lipid accumulation Sorted No BODIPY Gate -1.0 -0.0 -0.7 N.D. +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.9 +0.3 -0.8 N.D. -0.2
growth on ricinoleic acid YNB Glucose -1.0 -0.2 -0.1 N.D. -0.1
auxotrophy Dropout Complete -0.9 -0.0 +0.2 N.D. -0.4
auxotrophy YNB Glucose 75mM Arginine -1.1 -0.0 +0.2 N.D. -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.1 -0.9 N.D. +0.1
growth on oleic acid YNB Glucose -1.0 -0.1 +0.1 N.D. -0.1
auxotrophy YNB Glucose 75mM Methionine -0.9 -0.3 +0.3 N.D. -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 -0.2 -0.4 N.D. +0.0
growth on oleic acid YNB Oleic Acid -0.7 -0.0 -0.2 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy -0.2 -0.0 -0.8 N.D. +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.5 -0.5 N.D. +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.7 -0.2 +0.2 N.D. +0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.0 -0.1 -0.2 N.D. -0.1
ypd buoyancy 40 hrs Low Buoyancy -0.3 -0.1 -0.2 N.D. +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 -0.1 -0.4 N.D. +0.3
growth on ypd YPD +0.3 +0.2 +0.1 N.D. -0.3
ypd buoyancy 40 hrs Median Buoyancy +0.5 -0.2 +0.1 N.D. +0.3
remove
mRNA_1835
plot
remove
mRNA_1836
plot
remove
mRNA_1837
remove
mRNA_1838
plot
remove
mRNA_1839
plot