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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10204 and 10205 are separated by 495 nucleotides
10205 and 10206 are separated by 433 nucleotides
10206 and 10207 are separated by 100 nucleotides
10207 and 10208 are separated by 385 nucleotides
mRNA_1836: 10204 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 329,163 to 331,495
10204
mRNA_1837: 10205 - K00281 GLDC, gcvP glycine dehydrogenase, at 331,991 to 335,971
10205
mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336,405 to 337,627
10206
mRNA_1839: 10207 - Hypothetical Protein, at 337,728 to 339,625
10207
mRNA_1840: 10208 - Hypothetical Protein, at 340,011 to 340,722
10208
Group
Condition
mRNA
_1836
mRNA
_1837
mRNA
_1838
mRNA
_1839
mRNA
_1840
10204
10205
10206
10207
10208
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
N.D.
-0.1
-2.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.8
N.D.
-0.2
-1.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
N.D.
+0.0
-1.1
growth on ypd
YPD
+0.2
+0.1
N.D.
-0.3
-1.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.9
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.9
N.D.
+0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-1.1
N.D.
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.7
N.D.
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.5
N.D.
+0.1
+0.0
auxotrophy
YNB Glucose
-0.4
-0.1
N.D.
-0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.8
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
N.D.
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.2
N.D.
-0.2
-0.5
auxotrophy
Dropout Complete
-0.0
+0.2
N.D.
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
N.D.
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
N.D.
+0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
+0.5
-0.5
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.1
N.D.
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.4
N.D.
+0.3
+0.8
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