Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 10215 and 10216 are separated by 640 nucleotides10216 and 10217 are separated by 251 nucleotides10217 and 10218 are separated by 1084 nucleotides10218 and 10219 are separated by 721 nucleotides mRNA_1847: 10215 - BLAST GDP-fucose protein O-fucosyltransferase [Rhizopogon v..., at 360,311 to 362,309 10215 mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362,950 to 364,987 10216 mRNA_1849: 10217 - Hypothetical Protein, at 365,239 to 367,490 10217 mRNA_1850: 10218 - K00311 ETFDH electron-transferring-flavoprotein dehydrogenase, at 368,575 to 371,026 10218 mRNA_1851: 10219 - BLAST cell wall surface anchor family protein [Moniliop..., at 371,748 to 376,200 10219
Group Condition mRNA_1847 mRNA_1848 mRNA_1849 mRNA_1850 mRNA_1851
10215 10216 10217 10218 10219
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 -0.1 -0.0 -3.7 +0.1
growth on oleic acid YNB Oleic Acid -0.2 +0.1 -0.1 -2.5 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -0.1 -0.1 -2.3 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.0 +0.1 -1.1 +0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 +0.1 -0.3 -0.3 -0.4
auxotrophy YNB Glucose +0.1 -0.1 -0.0 -0.6 -0.2
auxotrophy YNB Glucose 75mM Methionine +0.0 -0.2 +0.0 -0.5 -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.3 +0.0 -0.4 +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.2 +0.2 -1.0 +0.0
growth on oleic acid YNB Glucose -0.0 +0.0 -0.0 -0.7 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 -0.1 +0.1 -0.7 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.3 +0.1 -0.1 -0.1
growth on ricinoleic acid YNB Glucose +0.1 +0.1 -0.1 -0.3 -0.3
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.0 -0.1 -0.2 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 +0.5 +0.1 -1.2 +0.1
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.2 +0.1 -0.3 +0.1
ypd buoyancy 40 hrs High Buoyancy -0.0 -0.1 -0.0 +0.4 -0.3
auxotrophy Dropout Complete +0.0 -0.2 +0.0 +0.1 +0.0
growth on ypd YPD +0.2 -0.2 -0.1 -0.2 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 +0.1 +0.4 -0.2 -0.1
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.1 -0.1 +0.5 -0.2
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