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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10216 and 10217 are separated by 251 nucleotides
10217 and 10218 are separated by 1084 nucleotides
10218 and 10219 are separated by 721 nucleotides
10219 and 10220 are separated by 82 nucleotides
mRNA_1848: 10216 - BLAST PC-Esterase [Xanthophyllomyces dendrorhous], at 362,950 to 364,987
10216
mRNA_1849: 10217 - Hypothetical Protein, at 365,239 to 367,490
10217
mRNA_1850: 10218 - K00311 ETFDH electron-transferring-flavoprotein dehydrogenase, at 368,575 to 371,026
10218
mRNA_1851: 10219 - BLAST cell wall surface anchor family protein [Moniliop..., at 371,748 to 376,200
10219
mRNA_1852: 10220 - K06133 LYS5, acpT 4'-phosphopantetheinyl transferase, at 376,283 to 377,328
10220
Group
Condition
mRNA
_1848
mRNA
_1849
mRNA
_1850
mRNA
_1851
mRNA
_1852
10216
10217
10218
10219
10220
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.0
-3.7
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
-2.5
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-2.3
+0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-1.0
+0.0
N.D.
auxotrophy
YNB Glucose
-0.1
-0.0
-0.6
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.1
-1.1
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.3
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
-0.5
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
+0.0
-0.4
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.0
-0.7
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.7
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.3
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
+0.1
-1.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.1
-0.1
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
-0.3
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.4
-0.3
N.D.
auxotrophy
Dropout Complete
-0.2
+0.0
+0.1
+0.0
N.D.
growth on ypd
YPD
-0.2
-0.1
-0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.5
-0.2
N.D.
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