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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10221 and 10222 are separated by 161 nucleotides
10222 and 10223 are separated by 409 nucleotides
10223 and 10224 are separated by 184 nucleotides
10224 and 10225 are separated by 288 nucleotides
mRNA_1853: 10221 - KOG4147 Uncharacterized conserved protein, at 377,840 to 378,489
10221
mRNA_1854: 10222 - Hypothetical Protein, at 378,651 to 380,549
10222
mRNA_1855: 10223 - BLAST secreted protein [Moesziomyces antarcticus], at 380,959 to 382,150
10223
mRNA_1856: 10224 - K10863 APTX aprataxin, at 382,335 to 383,661
10224
mRNA_1857: 10225 - KOG2533 Permease of the major facilitator superfamily, at 383,950 to 386,547
10225
Group
Condition
mRNA
_1853
mRNA
_1854
mRNA
_1855
mRNA
_1856
mRNA
_1857
10221
10222
10223
10224
10225
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.8
-0.3
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.2
-0.0
-0.8
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.4
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.3
-0.8
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.4
-0.6
+0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.2
-0.2
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
-0.0
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
-0.0
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.2
-0.2
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
-0.3
-0.5
+0.5
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
-0.3
-0.0
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.2
-0.2
+0.1
auxotrophy
Dropout Complete
N.D.
+0.1
-0.0
-0.2
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
-0.0
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.2
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
-0.5
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.2
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.0
+0.2
+0.1
growth on ypd
YPD
N.D.
+0.1
+0.8
+0.2
-0.4
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