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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10228 and 10229 are separated by 141 nucleotides
10229 and 10230 are separated by 423 nucleotides
10230 and 10231 are separated by 133 nucleotides
10231 and 10232 are separated by 382 nucleotides
mRNA_1860: 10228 - K02259 COX15 cytochrome c oxidase assembly protein subunit 15, at 391,370 to 393,300
10228
mRNA_1861: 10229 - KOG3348 BolA (bacterial stress-induced morphogen)-related protein, at 393,442 to 393,978
10229
mRNA_1862: 10230 - Interpro DNA replication factor Cdt1 C-terminal domain 0, at 394,402 to 396,759
10230
mRNA_1863: 10231 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 396,893 to 397,973
10231
mRNA_1864: 10232 - SUPERFAMILY--SSF53300, at 398,356 to 399,523
10232
Group
Condition
mRNA
_1860
mRNA
_1861
mRNA
_1862
mRNA
_1863
mRNA
_1864
10228
10229
10230
10231
10232
growth on ypd
YPD
N.D.
N.D.
-0.0
-0.2
-1.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.3
-0.6
-1.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.0
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
-0.1
-1.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
-0.2
-0.7
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.4
-0.1
-0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
-0.0
-0.9
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
-0.1
-0.6
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
-0.3
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-0.8
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.3
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.5
-0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.2
-0.5
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.2
-1.0
+1.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.1
+0.1
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.7
-0.3
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.6
+1.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
-0.4
+1.7
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