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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10230 and 10231 are separated by 133 nucleotides
10231 and 10232 are separated by 382 nucleotides
10232 and 10233 are separated by 214 nucleotides
10233 and 10234 are separated by 162 nucleotides
mRNA_1862: 10230 - Interpro DNA replication factor Cdt1 C-terminal domain 0, at 394,402 to 396,759
10230
mRNA_1863: 10231 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 396,893 to 397,973
10231
mRNA_1864: 10232 - SUPERFAMILY--SSF53300, at 398,356 to 399,523
10232
mRNA_1865: 10233 - K02729 PSMA5 20S proteasome subunit alpha 5, at 399,738 to 401,124
10233
mRNA_1866: 10234 - KOG4455 Uncharacterized conserved protein, at 401,287 to 402,071
10234
Group
Condition
mRNA
_1862
mRNA
_1863
mRNA
_1864
mRNA
_1865
mRNA
_1866
10230
10231
10232
10233
10234
growth on ricinoleic acid
YNB Glucose
+0.0
-0.0
-1.5
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.6
-1.4
N.D.
-0.2
growth on ypd
YPD
-0.0
-0.2
-1.9
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.1
-1.4
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.8
+0.1
N.D.
-0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
-0.9
N.D.
+0.3
growth on oleic acid
YNB Glucose
-0.4
-0.1
-0.6
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
-0.6
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.7
N.D.
+0.8
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.2
-0.2
N.D.
+0.0
auxotrophy
YNB Glucose
-0.1
-0.3
-0.4
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-1.0
+1.3
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
-0.2
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.0
+0.3
N.D.
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.3
+0.9
N.D.
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
-0.1
N.D.
+0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
+0.7
N.D.
+0.6
auxotrophy
Dropout Complete
-0.1
+0.2
+0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
+1.7
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.6
+1.8
N.D.
-0.3
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