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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10231 and 10232 are separated by 382 nucleotides
10232 and 10233 are separated by 214 nucleotides
10233 and 10234 are separated by 162 nucleotides
10234 and 10235 are separated by 445 nucleotides
mRNA_1863: 10231 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 396,893 to 397,973
10231
mRNA_1864: 10232 - SUPERFAMILY--SSF53300, at 398,356 to 399,523
10232
mRNA_1865: 10233 - K02729 PSMA5 20S proteasome subunit alpha 5, at 399,738 to 401,124
10233
mRNA_1866: 10234 - KOG4455 Uncharacterized conserved protein, at 401,287 to 402,071
10234
mRNA_1867: 10235 - HMMPfam-von Willebrand factor type A domain-PF00092,ProSiteProfiles-VWFA domain profile.-PS50234,SMART-von Willebrand factor (vWF) type A domain-SM00327,SUPERFAMILY--SSF53300, at 402,517 to 403,659
10235
Group
Condition
mRNA
_1863
mRNA
_1864
mRNA
_1865
mRNA
_1866
mRNA
_1867
10231
10232
10233
10234
10235
growth on ricinoleic acid
YNB Glucose
-0.0
-1.5
N.D.
-0.5
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-1.4
N.D.
-0.4
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-1.4
N.D.
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.9
N.D.
+0.3
-0.9
growth on ypd
YPD
-0.2
-1.9
N.D.
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
+0.1
N.D.
-0.7
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.6
N.D.
+0.3
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.9
N.D.
-0.7
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
N.D.
+0.1
-0.8
auxotrophy
YNB Glucose
-0.3
-0.4
N.D.
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.0
+1.3
N.D.
-0.3
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.7
N.D.
+0.8
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
N.D.
+0.6
-0.2
growth on oleic acid
YNB Glucose
-0.1
-0.6
N.D.
+0.4
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.7
N.D.
+0.6
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
N.D.
+0.8
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
N.D.
+0.5
+0.0
auxotrophy
Dropout Complete
+0.2
+0.2
N.D.
+0.4
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+1.7
N.D.
-0.5
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+1.8
N.D.
-0.3
+0.5
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