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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10238 and 10239 are separated by 49 nucleotides
10239 and 10240 are separated by 242 nucleotides
10240 and 10241 are separated by 213 nucleotides
10241 and 10242 are separated by 151 nucleotides
mRNA_1870: 10238 - K18043 OCA1 tyrosine-protein phosphatase OCA1, at 406,751 to 407,606
10238
mRNA_1871: 10239 - K14855 RSA4, NLE1 ribosome assembly protein 4, at 407,656 to 409,995
10239
mRNA_1872: 10240 - K14566 UTP24, FCF1 U3 small nucleolar RNA-associated protein 24, at 410,238 to 411,340
10240
mRNA_1873: 10241 - BLAST Rab geranylgeranyltransferase [Mycena chlorophos], at 411,554 to 414,002
10241
mRNA_1874: 10242 - BLAST midasin [Pseudozyma hubeiensis SY62], at 414,154 to 415,207
10242
Group
Condition
mRNA
_1870
mRNA
_1871
mRNA
_1872
mRNA
_1873
mRNA
_1874
10238
10239
10240
10241
10242
ypd buoyancy
40 hrs No Buoyancy Separation
-2.6
N.D.
N.D.
+0.2
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
N.D.
-1.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
N.D.
+0.2
-0.4
auxotrophy
YNB Glucose
-0.5
N.D.
N.D.
+0.5
-0.5
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
N.D.
+0.3
-0.5
auxotrophy
Dropout Complete
-0.6
N.D.
N.D.
+0.4
-0.4
growth on ypd
YPD
+0.1
N.D.
N.D.
-0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
N.D.
+0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
N.D.
+0.4
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
N.D.
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
N.D.
-0.3
+0.5
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
N.D.
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
N.D.
N.D.
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
N.D.
N.D.
+0.1
+0.1
growth on oleic acid
YNB Glucose
+0.5
N.D.
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
N.D.
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
N.D.
+0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
N.D.
+1.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
N.D.
+1.3
+0.1
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