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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10241 and 10242 are separated by 151 nucleotides
10242 and 10243 are separated by 276 nucleotides
10243 and 10244 are separated by 130 nucleotides
10244 and 10245 are separated by 406 nucleotides
mRNA_1873: 10241 - BLAST Rab geranylgeranyltransferase [Mycena chlorophos], at 411,554 to 414,002
10241
mRNA_1874: 10242 - BLAST midasin [Pseudozyma hubeiensis SY62], at 414,154 to 415,207
10242
mRNA_1875: 10243 - Hypothetical Protein, at 415,484 to 416,261
10243
mRNA_1876: 10244 - Hypothetical Protein, at 416,392 to 418,180
10244
mRNA_1877: 10245 - K03363 CDC20 cell division cycle 20, cofactor of APC complex, at 418,587 to 420,557
10245
Group
Condition
mRNA
_1873
mRNA
_1874
mRNA
_1875
mRNA
_1876
mRNA
_1877
10241
10242
10243
10244
10245
growth on ypd
YPD
-0.1
-0.4
N.D.
-0.8
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.6
N.D.
-1.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.4
N.D.
-0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.0
N.D.
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.5
N.D.
-0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
-0.5
N.D.
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.0
-0.4
N.D.
+1.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.4
-0.2
N.D.
+0.1
N.D.
auxotrophy
Dropout Complete
+0.4
-0.4
N.D.
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.4
N.D.
+0.5
N.D.
growth on oleic acid
YNB Glucose
+0.3
-0.1
N.D.
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
N.D.
+1.0
N.D.
auxotrophy
YNB Glucose
+0.5
-0.5
N.D.
+0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
N.D.
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
N.D.
+1.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.0
N.D.
+1.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.0
-0.1
N.D.
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
N.D.
+0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.3
+0.1
N.D.
+0.3
N.D.
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