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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10244 and 10245 are separated by 406 nucleotides
10245 and 10246 are separated by 294 nucleotides
10246 and 10247 are separated by 364 nucleotides
10247 and 10248 are separated by 141 nucleotides
mRNA_1876: 10244 - Hypothetical Protein, at 416,392 to 418,180
10244
mRNA_1877: 10245 - K03363 CDC20 cell division cycle 20, cofactor of APC complex, at 418,587 to 420,557
10245
mRNA_1878: 10246 - K01875 SARS, serS seryl-tRNA synthetase, at 420,852 to 422,750
10246
mRNA_1879: 10247 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 423,115 to 424,156
10247
mRNA_1880: 10248 - KOG0254 Predicted transporter (major facilitator superfamily), at 424,298 to 426,105
10248
Group
Condition
mRNA
_1876
mRNA
_1877
mRNA
_1878
mRNA
_1879
mRNA
_1880
10244
10245
10246
10247
10248
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
N.D.
N.D.
-1.0
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
N.D.
N.D.
-0.2
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
N.D.
N.D.
-0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
N.D.
N.D.
+0.0
+0.2
growth on ypd
YPD
-0.8
N.D.
N.D.
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
N.D.
-0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
N.D.
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
+0.3
-0.4
auxotrophy
Dropout Complete
+0.3
N.D.
N.D.
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.2
N.D.
N.D.
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
N.D.
N.D.
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
N.D.
-0.1
+0.3
auxotrophy
YNB Glucose
+0.7
N.D.
N.D.
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.6
N.D.
N.D.
+0.2
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
N.D.
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.2
N.D.
N.D.
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
N.D.
N.D.
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.8
N.D.
N.D.
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
N.D.
N.D.
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.3
N.D.
N.D.
+0.5
+0.3
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