Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 10249 and 10250 are separated by 679 nucleotides10250 and 10251 are separated by 323 nucleotides10251 and 10252 are separated by 615 nucleotides10252 and 10253 are separated by 261 nucleotides mRNA_1881: 10249 - K11770 SFH1 chromatin structure-remodeling complex subunit SFH1, at 426,689 to 428,081 10249 mRNA_1882: 10250 - HMMPfam-S4 domain-PF01479,ProSitePatterns-Ribosomal protein S4 signature.-PS00632,ProSiteProfiles-S4 RNA-binding domain profile.-PS50889,SMART-S4 RNA-binding domain-SM00363,SUPERFAMILY--SSF55174, at 428,761 to 429,844 10250 mRNA_1883: 10251 - KOG2665 Predicted FAD-dependent oxidoreductase, at 430,168 to 431,962 10251 mRNA_1884: 10252 - Hypothetical Protein, at 432,578 to 433,282 10252 mRNA_1885: 10253 - KOG1238 Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family), at 433,544 to 436,141 10253
Group Condition mRNA_1881 mRNA_1882 mRNA_1883 mRNA_1884 mRNA_1885
10249 10250 10251 10252 10253
growth on ypd YPD N.D. N.D. -0.1 -0.7 -0.4
auxotrophy Dropout Complete N.D. N.D. -0.4 -0.4 -0.1
auxotrophy YNB Glucose 75mM Arginine N.D. N.D. -0.1 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. N.D. -0.0 +0.2 -0.5
auxotrophy YNB Glucose 75mM Methionine N.D. N.D. -0.2 -0.0 -0.1
auxotrophy YNB Glucose N.D. N.D. +0.1 -0.0 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid N.D. N.D. +0.2 -0.6 +0.2
growth on ricinoleic acid YNB Glucose N.D. N.D. -0.0 -0.2 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. N.D. +0.0 -0.3 +0.1
growth on oleic acid YNB Glucose N.D. N.D. +0.0 -0.0 -0.1
growth on oleic acid YNB Oleic Acid N.D. N.D. -0.0 +0.1 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. N.D. -0.1 -0.0 +0.1
facs on lipid accumulation Sorted High BODIPY Gate N.D. N.D. +0.0 +0.2 -0.1
ypd buoyancy 40 hrs Low Buoyancy N.D. N.D. +0.3 -0.2 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate N.D. N.D. +0.2 -0.0 +0.2
ypd buoyancy 40 hrs High Buoyancy N.D. N.D. +0.3 -0.0 +0.1
facs on lipid accumulation Sorted No BODIPY Gate N.D. N.D. +0.0 -0.0 +0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. N.D. +0.1 +0.4 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. N.D. +0.3 +0.3 +0.0
ypd buoyancy 40 hrs Median Buoyancy N.D. N.D. +0.6 +0.1 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation N.D. N.D. +0.5 -0.0 +0.2
remove
mRNA_1881
plot
remove
mRNA_1882
plot
remove
mRNA_1883
remove
mRNA_1884
plot
remove
mRNA_1885
plot