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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10249 and 10250 are separated by 679 nucleotides
10250 and 10251 are separated by 323 nucleotides
10251 and 10252 are separated by 615 nucleotides
10252 and 10253 are separated by 261 nucleotides
mRNA_1881: 10249 - K11770 SFH1 chromatin structure-remodeling complex subunit SFH1, at 426,689 to 428,081
10249
mRNA_1882: 10250 - HMMPfam-S4 domain-PF01479,ProSitePatterns-Ribosomal protein S4 signature.-PS00632,ProSiteProfiles-S4 RNA-binding domain profile.-PS50889,SMART-S4 RNA-binding domain-SM00363,SUPERFAMILY--SSF55174, at 428,761 to 429,844
10250
mRNA_1883: 10251 - KOG2665 Predicted FAD-dependent oxidoreductase, at 430,168 to 431,962
10251
mRNA_1884: 10252 - Hypothetical Protein, at 432,578 to 433,282
10252
mRNA_1885: 10253 - KOG1238 Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family), at 433,544 to 436,141
10253
Group
Condition
mRNA
_1881
mRNA
_1882
mRNA
_1883
mRNA
_1884
mRNA
_1885
10249
10250
10251
10252
10253
growth on ypd
YPD
N.D.
N.D.
-0.1
-0.7
-0.4
auxotrophy
Dropout Complete
N.D.
N.D.
-0.4
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
+0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
-0.0
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
-0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.2
-0.6
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.0
-0.3
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.0
+0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.2
-0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.0
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.3
+0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.6
+0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
-0.0
+0.2
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