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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10253 and 10254 are separated by 447 nucleotides
10254 and 10255 are separated by 549 nucleotides
10255 and 10256 are separated by 742 nucleotides
10256 and 10257 are separated by 89 nucleotides
mRNA_1885: 10253 - KOG1238 Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family), at 433,544 to 436,141
10253
mRNA_1886: 10254 - KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins, at 436,589 to 438,730
10254
mRNA_1887: 10255 - K14823 EBP2, EBNA1BP2 rRNA-processing protein EBP2, at 439,280 to 440,428
10255
mRNA_1888: 10256 - HMMPfam-Protein of unknown function (DUF2423)-PF10338, at 441,171 to 441,971
10256
mRNA_1889: 10257 - Hypothetical Protein, at 442,061 to 442,321
10257
Group
Condition
mRNA
_1885
mRNA
_1886
mRNA
_1887
mRNA
_1888
mRNA
_1889
10253
10254
10255
10256
10257
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
N.D.
-1.9
-0.4
growth on ypd
YPD
-0.4
+0.2
N.D.
-0.8
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.1
N.D.
-0.9
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.4
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.4
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.2
N.D.
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
N.D.
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
N.D.
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
N.D.
+0.7
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.2
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
N.D.
+0.6
+0.2
auxotrophy
Dropout Complete
-0.1
+0.0
N.D.
+1.0
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.1
N.D.
+0.8
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
N.D.
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
N.D.
+0.9
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.3
N.D.
+0.7
+0.0
auxotrophy
YNB Glucose
-0.3
+0.5
N.D.
+0.8
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
N.D.
+1.4
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.3
N.D.
+1.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
N.D.
+1.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.0
N.D.
+1.7
+0.3
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