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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10254 and 10255 are separated by 549 nucleotides
10255 and 10256 are separated by 742 nucleotides
10256 and 10257 are separated by 89 nucleotides
10257 and 10258 are separated by 69 nucleotides
mRNA_1886: 10254 - KOG1470 Phosphatidylinositol transfer protein PDR16 and related proteins, at 436,589 to 438,730
10254
mRNA_1887: 10255 - K14823 EBP2, EBNA1BP2 rRNA-processing protein EBP2, at 439,280 to 440,428
10255
mRNA_1888: 10256 - HMMPfam-Protein of unknown function (DUF2423)-PF10338, at 441,171 to 441,971
10256
mRNA_1889: 10257 - Hypothetical Protein, at 442,061 to 442,321
10257
mRNA_1890: 10258 - Hypothetical Protein, at 442,391 to 442,819
10258
Group
Condition
mRNA
_1886
mRNA
_1887
mRNA
_1888
mRNA
_1889
mRNA
_1890
10254
10255
10256
10257
10258
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
-1.9
-0.4
-0.3
growth on ypd
YPD
+0.2
N.D.
-0.8
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.9
+0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.2
-0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.3
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
+0.2
-0.0
+0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
+0.4
-0.1
+0.3
auxotrophy
Dropout Complete
+0.0
N.D.
+1.0
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
+1.2
-0.0
-0.8
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.0
-0.1
+0.5
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.7
+0.1
+0.2
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.8
+0.1
+0.1
auxotrophy
YNB Glucose
+0.5
N.D.
+0.8
-0.0
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+1.4
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.6
+0.2
+0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
+0.7
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.9
-0.0
+0.7
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.7
+0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
N.D.
+1.7
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+1.4
+0.1
+0.1
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