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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10258 and 10259 are separated by 594 nucleotides
10259 and 10260 are separated by 596 nucleotides
10260 and 10261 are separated by 653 nucleotides
10261 and 10262 are separated by 361 nucleotides
mRNA_1890: 10258 - Hypothetical Protein, at 442,391 to 442,819
10258
mRNA_1891: 10259 - K03083 GSK3B glycogen synthase kinase 3 beta, at 443,414 to 444,929
10259
mRNA_1892: 10260 - K15743 CES3_5 carboxylesterase 3/5, at 445,526 to 447,987
10260
mRNA_1893: 10261 - HMMPfam-Amidohydrolase-PF04909,SUPERFAMILY--SSF51556, at 448,641 to 450,220
10261
mRNA_1894: 10262 - K01253 EPHX1 microsomal epoxide hydrolase, at 450,582 to 452,258
10262
Group
Condition
mRNA
_1890
mRNA
_1891
mRNA
_1892
mRNA
_1893
mRNA
_1894
10258
10259
10260
10261
10262
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-3.3
-0.1
+0.1
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-3.1
+0.3
+0.3
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-2.6
-0.3
+0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-2.2
-0.3
+0.4
+0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.5
+0.3
-0.2
-0.3
auxotrophy
YNB Glucose
-0.2
+0.1
-0.0
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.5
+0.2
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.4
-0.7
-0.2
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.3
-0.3
+0.3
+0.0
auxotrophy
Dropout Complete
-0.2
+0.4
-0.3
-0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.0
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-1.0
-0.0
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
-0.2
+0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.4
-0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.8
-0.3
+0.0
-0.2
growth on ypd
YPD
-0.1
+0.6
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.7
-0.1
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+1.1
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.4
+0.7
+0.5
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
+2.2
-0.1
+0.0
+0.0
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