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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10261 and 10262 are separated by 361 nucleotides
10262 and 10263 are separated by 115 nucleotides
10263 and 10264 are separated by 498 nucleotides
10264 and 10265 are separated by 372 nucleotides
mRNA_1893: 10261 - HMMPfam-Amidohydrolase-PF04909,SUPERFAMILY--SSF51556, at 448,641 to 450,220
10261
mRNA_1894: 10262 - K01253 EPHX1 microsomal epoxide hydrolase, at 450,582 to 452,258
10262
mRNA_1895: 10263 - K09247 CYP1, HAP1 heme activator protein 1, at 452,374 to 455,740
10263
mRNA_1896: 10264 - K00844 HK hexokinase, at 456,239 to 458,071
10264
mRNA_1897: 10265 - K07443 ybaZ methylated-DNA-protein-cysteine methyltransferase related protein, at 458,444 to 459,156
10265
Group
Condition
mRNA
_1893
mRNA
_1894
mRNA
_1895
mRNA
_1896
mRNA
_1897
10261
10262
10263
10264
10265
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.5
+0.1
-3.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.4
-0.6
-1.6
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
+0.1
-2.1
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
-0.4
-2.0
-0.0
auxotrophy
YNB Glucose
-0.2
-0.2
-0.6
-1.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.1
-1.6
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
-0.5
-0.6
+0.3
growth on oleic acid
YNB Glucose
+0.3
+0.0
-0.7
-0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.2
-0.6
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.6
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.0
-0.6
-1.0
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.3
-0.1
-0.1
auxotrophy
Dropout Complete
-0.1
-0.1
-0.4
+0.4
-0.1
growth on ypd
YPD
+0.1
+0.2
-0.2
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.0
-0.5
+0.5
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
-0.1
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.4
-0.3
+0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
+0.3
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
-0.1
+0.5
+0.2
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
-0.1
+1.0
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.6
+0.1
+0.9
+0.1
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