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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10264 and 10265 are separated by 372 nucleotides
10265 and 10266 are separated by 594 nucleotides
10266 and 10267 are separated by 527 nucleotides
10267 and 10268 are separated by 278 nucleotides
mRNA_1896: 10264 - K00844 HK hexokinase, at 456,239 to 458,071
10264
mRNA_1897: 10265 - K07443 ybaZ methylated-DNA-protein-cysteine methyltransferase related protein, at 458,444 to 459,156
10265
mRNA_1898: 10266 - K09422 MYBP myb proto-oncogene protein, plant, at 459,751 to 462,341
10266
mRNA_1899: 10267 - K14946 RBFOX, FOX RNA binding protein fox-1, at 462,869 to 464,416
10267
mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464,695 to 468,117
10268
Group
Condition
mRNA
_1896
mRNA
_1897
mRNA
_1898
mRNA
_1899
mRNA
_1900
10264
10265
10266
10267
10268
ypd buoyancy
40 hrs Low Buoyancy
-3.1
+0.2
N.D.
-0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-1.6
-0.0
N.D.
-0.4
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-2.1
-0.0
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.3
N.D.
-0.7
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.6
-0.0
N.D.
+0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
+0.5
N.D.
-0.2
-0.9
growth on ricinoleic acid
YNB Glucose
-2.0
-0.0
N.D.
+0.3
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
N.D.
-0.6
-0.2
auxotrophy
YNB Glucose
-1.1
+0.1
N.D.
+0.0
+0.4
growth on oleic acid
YNB Glucose
-0.5
-0.1
N.D.
+0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.1
N.D.
+0.5
-1.4
growth on ypd
YPD
+0.1
+0.0
N.D.
-0.6
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.3
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.3
N.D.
-0.2
-0.5
auxotrophy
Dropout Complete
+0.4
-0.1
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.3
N.D.
+0.2
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.5
N.D.
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+1.0
-0.0
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.2
N.D.
+0.4
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
N.D.
+0.7
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.1
N.D.
+0.3
+0.9
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