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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10266 and 10267 are separated by 527 nucleotides
10267 and 10268 are separated by 278 nucleotides
10268 and 10269 are separated by 324 nucleotides
10269 and 10270 are separated by 120 nucleotides
mRNA_1898: 10266 - K09422 MYBP myb proto-oncogene protein, plant, at 459,751 to 462,341
10266
mRNA_1899: 10267 - K14946 RBFOX, FOX RNA binding protein fox-1, at 462,869 to 464,416
10267
mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464,695 to 468,117
10268
mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468,442 to 470,059
10269
mRNA_1902: 10270 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 470,180 to 472,538
10270
Group
Condition
mRNA
_1898
mRNA
_1899
mRNA
_1900
mRNA
_1901
mRNA
_1902
10266
10267
10268
10269
10270
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
-1.4
-1.4
-0.9
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.9
-0.6
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
-0.5
-0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.2
-1.9
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.5
-0.1
+0.1
auxotrophy
Dropout Complete
N.D.
-0.0
-0.1
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.7
-0.9
+0.6
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
-0.2
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
-0.3
+0.3
-0.5
growth on ypd
YPD
N.D.
-0.6
+0.0
+0.3
+0.1
auxotrophy
YNB Glucose
N.D.
+0.0
+0.4
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.3
-0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.3
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.2
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
-0.1
+0.0
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.6
-0.6
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
+0.0
+0.4
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
+1.0
-0.7
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.1
+0.3
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.9
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
+0.3
+0.9
-0.4
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