Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 10268 and 10269 are separated by 324 nucleotides10269 and 10270 are separated by 120 nucleotides10270 and 10271 are separated by 1764 nucleotides10271 and 10272 are separated by 745 nucleotides mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464,695 to 468,117 10268 mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468,442 to 470,059 10269 mRNA_1902: 10270 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 470,180 to 472,538 10270 mRNA_1903: 10271 - HMMPfam-Sfi1 spindle body protein-PF08457, at 474,303 to 478,311 10271 mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479,057 to 480,594 10272
Group Condition mRNA_1900 mRNA_1901 mRNA_1902 mRNA_1903 mRNA_1904
10268 10269 10270 10271 10272
facs on lipid accumulation Sorted Low BODIPY Gate -1.4 -1.4 -0.9 N.D. -0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 -1.9 +0.4 N.D. -0.5
facs on lipid accumulation Sorted No BODIPY Gate -0.9 -0.6 +0.1 N.D. -0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.5 -0.3 -0.3 N.D. +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 -0.1 +0.1 N.D. -0.4
auxotrophy Dropout Complete -0.1 -0.5 -0.0 N.D. -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.3 -0.5 N.D. -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid +1.0 -0.7 -0.3 N.D. -0.4
auxotrophy YNB Glucose 75mM Arginine +0.3 -0.5 +0.2 N.D. -0.2
growth on ricinoleic acid YNB Glucose +0.6 -0.6 +0.1 N.D. -0.4
auxotrophy YNB Glucose +0.4 -0.4 -0.1 N.D. -0.1
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.2 +0.3 N.D. -0.1
growth on oleic acid YNB Oleic Acid -0.1 +0.0 +0.0 N.D. -0.0
ypd buoyancy 40 hrs Median Buoyancy -0.3 +0.5 -0.1 N.D. +0.0
growth on ypd YPD +0.0 +0.3 +0.1 N.D. -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 +0.2 +0.3 N.D. +0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.9 -0.2 -0.2 N.D. -0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.9 +0.6 +0.6 N.D. +0.1
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.9 -0.4 N.D. -0.3
growth on oleic acid YNB Glucose -0.1 +0.3 +0.3 N.D. +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.0 +0.4 +0.1 N.D. +0.1
remove
mRNA_1900
plot
remove
mRNA_1901
plot
remove
mRNA_1902
remove
mRNA_1903
plot
remove
mRNA_1904
plot