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Cofit
Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10268 and 10269 are separated by 324 nucleotides
10269 and 10270 are separated by 120 nucleotides
10270 and 10271 are separated by 1764 nucleotides
10271 and 10272 are separated by 745 nucleotides
mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464,695 to 468,117
10268
mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468,442 to 470,059
10269
mRNA_1902: 10270 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 470,180 to 472,538
10270
mRNA_1903: 10271 - HMMPfam-Sfi1 spindle body protein-PF08457, at 474,303 to 478,311
10271
mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479,057 to 480,594
10272
Group
Condition
mRNA
_1900
mRNA
_1901
mRNA
_1902
mRNA
_1903
mRNA
_1904
10268
10269
10270
10271
10272
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
-1.4
-0.9
N.D.
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-1.9
+0.4
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-0.6
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.3
-0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
+0.1
N.D.
-0.4
auxotrophy
Dropout Complete
-0.1
-0.5
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.3
-0.5
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
-0.7
-0.3
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.5
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.6
-0.6
+0.1
N.D.
-0.4
auxotrophy
YNB Glucose
+0.4
-0.4
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.3
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
+0.0
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.5
-0.1
N.D.
+0.0
growth on ypd
YPD
+0.0
+0.3
+0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.2
+0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
-0.2
-0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.6
+0.6
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.9
-0.4
N.D.
-0.3
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.4
+0.1
N.D.
+0.1
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