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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10270 and 10271 are separated by 1764 nucleotides
10271 and 10272 are separated by 745 nucleotides
10272 and 10273 are separated by 205 nucleotides
10273 and 10274 are separated by 1346 nucleotides
mRNA_1902: 10270 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 470,180 to 472,538
10270
mRNA_1903: 10271 - HMMPfam-Sfi1 spindle body protein-PF08457, at 474,303 to 478,311
10271
mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479,057 to 480,594
10272
mRNA_1905: 10273 - Hypothetical Protein, at 480,800 to 481,665
10273
mRNA_1906: 10274 - KOG0627 Heat shock transcription factor, at 483,012 to 484,134
10274
Group
Condition
mRNA
_1902
mRNA
_1903
mRNA
_1904
mRNA
_1905
mRNA
_1906
10270
10271
10272
10273
10274
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
-0.4
-0.2
-2.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.0
+0.0
-2.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
-0.3
+0.1
-1.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
-0.1
-0.1
-2.0
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
-0.0
-0.3
-2.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.1
+0.1
-2.4
growth on oleic acid
YNB Glucose
+0.3
N.D.
+0.1
-0.2
-2.0
auxotrophy
Dropout Complete
-0.0
N.D.
-0.1
-0.1
-1.6
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.4
-0.1
-1.4
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
-0.3
+0.0
-1.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.1
+0.0
-1.7
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.2
-0.1
-1.3
auxotrophy
YNB Glucose
-0.1
N.D.
-0.1
-0.0
-1.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
+0.0
-0.6
growth on ypd
YPD
+0.1
N.D.
-0.4
+0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.0
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.4
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.1
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
-0.5
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
N.D.
+0.1
+0.1
-0.1
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