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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
10272 and 10273 are separated by 205 nucleotides
10273 and 10274 are separated by 1346 nucleotides
10274 and 10275 are separated by 3747 nucleotides
10275 and 10276 are separated by 1345 nucleotides
mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479,057 to 480,594
10272
mRNA_1905: 10273 - Hypothetical Protein, at 480,800 to 481,665
10273
mRNA_1906: 10274 - KOG0627 Heat shock transcription factor, at 483,012 to 484,134
10274
mRNA_1907: 10275 - Hypothetical Protein, at 487,882 to 489,189
10275
mRNA_1908: 10276 - K01426 E3.5.1.4, amiE amidase, at 490,535 to 492,598
10276
Group
Condition
mRNA
_1904
mRNA
_1905
mRNA
_1906
mRNA
_1907
mRNA
_1908
10272
10273
10274
10275
10276
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
-2.7
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.0
-0.3
-2.0
N.D.
-0.6
growth on oleic acid
YNB Glucose
+0.1
-0.2
-2.0
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
-2.0
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.0
-2.6
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-2.4
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
-1.7
N.D.
-0.3
auxotrophy
Dropout Complete
-0.1
-0.1
-1.6
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
-1.4
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.1
-1.7
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-1.3
N.D.
+0.1
auxotrophy
YNB Glucose
-0.1
-0.0
-1.3
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.0
-1.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.1
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.0
+0.2
N.D.
-0.5
growth on ypd
YPD
-0.4
+0.1
-0.5
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.6
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
-0.3
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.0
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.1
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.2
+0.5
N.D.
+0.5
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